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Sample GSM203361 Query DataSets for GSM203361
Status Public on Jun 22, 2007
Title R626P01184
Sample type RNA
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 0%
Percentage of Stroma: 64%
Percentage of BPH: 26%
Percentage of Atrophic Gland: 10%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
VALUE RMA calculated log2 Signal intensity

Data table
1007_s_at 10.63331646
1053_at 6.306654829
117_at 7.138288452
121_at 9.928657499
1255_g_at 4.833661835
1294_at 8.735951723
1316_at 6.089251883
1320_at 5.794702719
1405_i_at 6.510121734
1431_at 4.653950851
1438_at 8.962450087
1487_at 8.242304464
1494_f_at 7.616680114
1598_g_at 11.36811548
160020_at 9.304411455
1729_at 8.10214048
1773_at 6.858033282
177_at 6.451916263
179_at 10.11954757
1861_at 6.914505648

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM203361.CEL.gz 3.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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