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Sample GSM203360 Query DataSets for GSM203360
Status Public on Jun 22, 2007
Title R625P00906
Sample type RNA
 
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 0%
Percentage of Stroma: 53%
Percentage of BPH: 32%
Percentage of Atrophic Gland: 13%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
 
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
E-mail(s) ywang@sdibr.org
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
ID_REF
VALUE RMA calculated log2 Signal intensity

Data table
ID_REF VALUE
1007_s_at 10.49730275
1053_at 6.317261208
117_at 6.993457235
121_at 9.88630442
1255_g_at 4.901605358
1294_at 8.440051743
1316_at 6.26647469
1320_at 5.716774489
1405_i_at 6.169144403
1431_at 4.667368115
1438_at 8.825299781
1487_at 8.176722676
1494_f_at 7.746956414
1598_g_at 10.85583492
160020_at 9.156620291
1729_at 8.210765607
1773_at 6.712677276
177_at 6.378637157
179_at 10.14427209
1861_at 7.052793324

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.




Supplementary file Size Download File type/resource
GSM203360.CEL.gz 3.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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