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Sample GSM203358 Query DataSets for GSM203358
Status Public on Jun 22, 2007
Title R623P01188
Sample type RNA
 
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 0%
Percentage of Stroma: 92%
Percentage of BPH: 2%
Percentage of Atrophic Gland: 4%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
 
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
E-mail(s) ywang@sdibr.org
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
ID_REF
VALUE RMA calculated log2 Signal intensity

Data table
ID_REF VALUE
1007_s_at 10.44665824
1053_at 6.266163912
117_at 6.946480876
121_at 9.657540911
1255_g_at 4.863872875
1294_at 8.865193924
1316_at 6.177566417
1320_at 5.678725136
1405_i_at 6.476404014
1431_at 4.576502432
1438_at 8.338655777
1487_at 8.483437391
1494_f_at 7.634149705
1598_g_at 11.73070997
160020_at 9.096283586
1729_at 8.087982989
1773_at 6.681303068
177_at 6.269319645
179_at 10.0045276
1861_at 6.923571637

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.




Supplementary file Size Download File type/resource
GSM203358.CEL.gz 3.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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