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Sample GSM203355 Query DataSets for GSM203355
Status Public on Jun 22, 2007
Title R601P01083
Sample type RNA
Source name normal prostate sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 0%
Percentage of Stroma: 92%
Percentage of BPH: 1%
Percentage of Atrophic Gland: 4%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
VALUE RMA calculated log2 Signal intensity

Data table
1007_s_at 9.715269747
1053_at 6.583690536
117_at 7.4260409
121_at 9.469103346
1255_g_at 4.837050112
1294_at 8.417374779
1316_at 5.982583124
1320_at 5.657779929
1405_i_at 5.452107307
1431_at 4.631452606
1438_at 8.301814664
1487_at 8.153437554
1494_f_at 7.417772362
1598_g_at 11.39577882
160020_at 9.189664624
1729_at 8.04714907
1773_at 6.806720527
177_at 6.247089281
179_at 9.654118021
1861_at 6.32021146

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM203355.CEL.gz 3.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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