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Sample GSM203354 Query DataSets for GSM203354
Status Public on Jun 22, 2007
Title R592P01081
Sample type RNA
Source name normal prostate sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 0%
Percentage of Stroma: 72%
Percentage of BPH: 3%
Percentage of Atrophic Gland: 17%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
VALUE RMA calculated log2 Signal intensity

Data table
1007_s_at 10.76643468
1053_at 6.844663633
117_at 6.797417682
121_at 9.660112898
1255_g_at 4.834626193
1294_at 8.296628709
1316_at 6.073086077
1320_at 5.636876828
1405_i_at 5.834920758
1431_at 4.539746398
1438_at 8.256546019
1487_at 8.461227356
1494_f_at 7.684930174
1598_g_at 11.19315482
160020_at 9.074223303
1729_at 8.006900169
1773_at 6.649780851
177_at 6.226372847
179_at 9.960413775
1861_at 6.810704476

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM203354.CEL.gz 3.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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