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Sample GSM203353 Query DataSets for GSM203353
Status Public on Jun 22, 2007
Title R591P01072
Sample type RNA
 
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 0%
Percentage of Stroma: 84%
Percentage of BPH: 7%
Percentage of Atrophic Gland: 1%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
 
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
E-mail(s) ywang@sdibr.org
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
ID_REF
VALUE RMA calculated log2 Signal intensity

Data table
ID_REF VALUE
1007_s_at 10.45235968
1053_at 6.273842125
117_at 6.861303585
121_at 9.93836309
1255_g_at 5.001853497
1294_at 8.587869665
1316_at 6.142026113
1320_at 5.612662992
1405_i_at 6.824545513
1431_at 4.627402281
1438_at 8.417858576
1487_at 8.018319757
1494_f_at 7.671986311
1598_g_at 11.24259797
160020_at 9.289191119
1729_at 8.094423751
1773_at 6.462488125
177_at 6.34908045
179_at 9.765199285
1861_at 6.592318507

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.




Supplementary file Size Download File type/resource
GSM203353.CEL.gz 3.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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