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Sample GSM203351 Query DataSets for GSM203351
Status Public on Jun 22, 2007
Title R589P01070
Sample type RNA
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 0%
Percentage of Stroma: 82%
Percentage of BPH: 5%
Percentage of Atrophic Gland: 12%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
VALUE RMA calculated log2 Signal intensity

Data table
1007_s_at 10.88635272
1053_at 6.415811684
117_at 6.74467503
121_at 9.6386896
1255_g_at 4.921813069
1294_at 8.724343576
1316_at 6.058828328
1320_at 5.566864546
1405_i_at 7.06620125
1431_at 4.724544569
1438_at 8.423152544
1487_at 8.133238539
1494_f_at 7.418408918
1598_g_at 11.01142016
160020_at 9.119219357
1729_at 8.261011715
1773_at 6.479649942
177_at 6.310122711
179_at 9.786782246
1861_at 6.631856626

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM203351.CEL.gz 3.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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