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Sample GSM203350 Query DataSets for GSM203350
Status Public on Jun 22, 2007
Title R588P01069
Sample type RNA
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 2%
Percentage of Stroma: 63%
Percentage of BPH: 13%
Percentage of Atrophic Gland: 12%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
VALUE RMA calculated log2 Signal intensity

Data table
1007_s_at 10.77662882
1053_at 6.254682972
117_at 6.857549268
121_at 9.880138623
1255_g_at 4.92870012
1294_at 8.491068959
1316_at 6.224380898
1320_at 5.759051055
1405_i_at 7.375940156
1431_at 4.654304434
1438_at 8.618880597
1487_at 7.93324937
1494_f_at 7.687393071
1598_g_at 11.45120297
160020_at 9.363311985
1729_at 8.209835662
1773_at 6.394892389
177_at 6.180586755
179_at 9.858826164
1861_at 6.379974685

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM203350.CEL.gz 3.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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