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Sample GSM203349 Query DataSets for GSM203349
Status Public on Jun 22, 2007
Title R587P01067
Sample type RNA
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 0%
Percentage of Stroma: 82%
Percentage of BPH: 2%
Percentage of Atrophic Gland: 10%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
VALUE RMA calculated log2 Signal intensity

Data table
1007_s_at 10.73667907
1053_at 6.501738856
117_at 6.774775843
121_at 9.58092072
1255_g_at 4.916131494
1294_at 8.63392218
1316_at 6.156868005
1320_at 5.535677591
1405_i_at 7.185595995
1431_at 4.565099383
1438_at 8.306616462
1487_at 7.909195295
1494_f_at 7.411465758
1598_g_at 11.33892739
160020_at 9.004079626
1729_at 8.119181195
1773_at 6.312448102
177_at 6.152860446
179_at 9.69571666
1861_at 6.80592786

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM203349.CEL.gz 3.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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