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Sample GSM203348 Query DataSets for GSM203348
Status Public on Jun 22, 2007
Title R586P01066
Sample type RNA
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 0%
Percentage of Stroma: 74%
Percentage of BPH: 20%
Percentage of Atrophic Gland: 4%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
VALUE RMA calculated log2 Signal intensity

Data table
1007_s_at 10.44092487
1053_at 6.388326806
117_at 6.742612927
121_at 9.664727632
1255_g_at 4.92711503
1294_at 8.78724471
1316_at 6.095596701
1320_at 5.690297921
1405_i_at 6.688715698
1431_at 4.650616041
1438_at 8.085013423
1487_at 8.088514492
1494_f_at 7.349459526
1598_g_at 11.18446487
160020_at 8.963510129
1729_at 8.217758984
1773_at 6.566240086
177_at 6.213546578
179_at 9.824818004
1861_at 6.799672979

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM203348.CEL.gz 3.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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