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Sample GSM203347 Query DataSets for GSM203347
Status Public on Jun 22, 2007
Title R585P01065
Sample type RNA
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 70%
Percentage of Stroma: 29%
Percentage of BPH: 1%
Percentage of Atrophic Gland: 0%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
VALUE RMA calculated log2 Signal intensity

Data table
1007_s_at 10.52878367
1053_at 6.833467861
117_at 6.87623632
121_at 9.808958508
1255_g_at 4.925210198
1294_at 8.176408773
1316_at 6.132989049
1320_at 5.67227251
1405_i_at 5.798751771
1431_at 4.708902187
1438_at 8.44217524
1487_at 8.470633443
1494_f_at 7.602166328
1598_g_at 10.22900132
160020_at 8.910869505
1729_at 7.653981081
1773_at 6.807366454
177_at 6.354380782
179_at 10.04228152
1861_at 6.925415869

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM203347.CEL.gz 3.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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