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Sample GSM203346 Query DataSets for GSM203346
Status Public on Jun 22, 2007
Title R584P01064
Sample type RNA
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 0%
Percentage of Stroma: 62%
Percentage of BPH: 30%
Percentage of Atrophic Gland: 5%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
VALUE RMA calculated log2 Signal intensity

Data table
1007_s_at 10.5603212
1053_at 6.287557679
117_at 6.874919083
121_at 9.585745999
1255_g_at 4.948036908
1294_at 8.874767899
1316_at 6.144113703
1320_at 5.707298705
1405_i_at 6.689830799
1431_at 4.767484787
1438_at 8.323588595
1487_at 7.977146442
1494_f_at 7.515509604
1598_g_at 11.43538416
160020_at 9.050329954
1729_at 8.264474197
1773_at 6.667033773
177_at 6.266970829
179_at 9.947266255
1861_at 7.099023986

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM203346.CEL.gz 3.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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