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Sample GSM203343 Query DataSets for GSM203343
Status Public on Jun 22, 2007
Title R581P01061
Sample type RNA
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 24%
Percentage of Stroma: 58%
Percentage of BPH: 10%
Percentage of Atrophic Gland: 4%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
VALUE RMA calculated log2 Signal intensity

Data table
1007_s_at 10.49329592
1053_at 6.35597725
117_at 6.751357158
121_at 9.503732424
1255_g_at 4.876629722
1294_at 8.510895156
1316_at 6.042084513
1320_at 5.601328996
1405_i_at 7.275162636
1431_at 4.609605461
1438_at 8.964263359
1487_at 8.060776187
1494_f_at 7.210921893
1598_g_at 10.66851688
160020_at 8.694858734
1729_at 8.192435451
1773_at 6.42373516
177_at 6.15257199
179_at 9.827195618
1861_at 7.044065611

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM203343.CEL.gz 3.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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