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Sample GSM203342 Query DataSets for GSM203342
Status Public on Jun 22, 2007
Title R570P00762
Sample type RNA
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 0%
Percentage of Stroma: 70%
Percentage of BPH: 22%
Percentage of Atrophic Gland: 2%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
VALUE RMA calculated log2 Signal intensity

Data table
1007_s_at 10.69686142
1053_at 6.556347399
117_at 6.832607373
121_at 9.677677383
1255_g_at 4.917358368
1294_at 8.47082546
1316_at 6.184670177
1320_at 5.677358826
1405_i_at 6.239913493
1431_at 4.715045364
1438_at 8.499773593
1487_at 8.073706984
1494_f_at 7.489450521
1598_g_at 10.87629728
160020_at 8.939113152
1729_at 8.21698146
1773_at 6.849464239
177_at 6.267756252
179_at 9.695509245
1861_at 6.805571781

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM203342.CEL.gz 3.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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