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Sample GSM203341 Query DataSets for GSM203341
Status Public on Jun 22, 2007
Title R569P00764
Sample type RNA
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 75%
Percentage of Stroma: 23%
Percentage of BPH: 0%
Percentage of Atrophic Gland: 1%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
VALUE RMA calculated log2 Signal intensity

Data table
1007_s_at 10.54901342
1053_at 6.563614637
117_at 6.731306979
121_at 9.692527889
1255_g_at 4.952820719
1294_at 7.838315573
1316_at 5.908499651
1320_at 5.562070655
1405_i_at 6.119315727
1431_at 4.56323097
1438_at 8.173464297
1487_at 8.323470359
1494_f_at 7.35859344
1598_g_at 10.49406305
160020_at 8.817890828
1729_at 7.640748409
1773_at 6.573230328
177_at 6.167044256
179_at 9.591664521
1861_at 7.268961865

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM203341.CEL.gz 3.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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