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Sample GSM203320 Query DataSets for GSM203320
Status Public on Jun 22, 2007
Title R529P00609
Sample type RNA
 
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 0%
Percentage of Stroma: 58%
Percentage of BPH: 37%
Percentage of Atrophic Gland: 3%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
 
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
E-mail(s) ywang@sdibr.org
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
ID_REF
VALUE RMA calculated log2 Signal intensity

Data table
ID_REF VALUE
1007_s_at 10.45232879
1053_at 6.369576826
117_at 6.744591835
121_at 9.716863503
1255_g_at 4.882114781
1294_at 8.425364113
1316_at 5.981460135
1320_at 5.781499307
1405_i_at 6.089186866
1431_at 4.653428519
1438_at 8.289522722
1487_at 7.995166924
1494_f_at 7.407093697
1598_g_at 10.76371639
160020_at 8.7092417
1729_at 8.39744844
1773_at 6.769273989
177_at 6.249672293
179_at 9.908903547
1861_at 7.53502116

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.




Supplementary file Size Download File type/resource
GSM203320.CEL.gz 3.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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