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Sample GSM203312 Query DataSets for GSM203312
Status Public on Jun 22, 2007
Title R521P00428
Sample type RNA
 
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 9%
Percentage of Stroma: 67%
Percentage of BPH: 14%
Percentage of Atrophic Gland: 10%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
 
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
E-mail(s) ywang@sdibr.org
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
ID_REF
VALUE RMA calculated log2 Signal intensity

Data table
ID_REF VALUE
1007_s_at 10.7371304
1053_at 6.597515481
117_at 6.906811394
121_at 9.5990445
1255_g_at 4.958252717
1294_at 8.784895094
1316_at 6.303426333
1320_at 5.780425983
1405_i_at 6.243518293
1431_at 4.740948887
1438_at 8.506078543
1487_at 8.10891451
1494_f_at 7.564710087
1598_g_at 10.68554272
160020_at 8.848837656
1729_at 8.496971783
1773_at 6.818455475
177_at 6.22914105
179_at 9.992513015
1861_at 7.703471698

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.




Supplementary file Size Download File type/resource
GSM203312.CEL.gz 3.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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