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Sample GSM203311 Query DataSets for GSM203311
Status Public on Jun 22, 2007
Title R496P00521
Sample type RNA
 
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 48%
Percentage of Stroma: 36%
Percentage of BPH: 3%
Percentage of Atrophic Gland: 9%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
 
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
E-mail(s) ywang@sdibr.org
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
ID_REF
VALUE RMA calculated log2 Signal intensity

Data table
ID_REF VALUE
1007_s_at 10.6565548
1053_at 6.360159517
117_at 6.89698144
121_at 9.604359703
1255_g_at 4.86751941
1294_at 8.285504046
1316_at 6.015661891
1320_at 5.568015181
1405_i_at 6.592998022
1431_at 4.608060772
1438_at 9.337036241
1487_at 8.170417715
1494_f_at 7.365499351
1598_g_at 11.16492999
160020_at 8.964698232
1729_at 8.341968488
1773_at 6.751806671
177_at 6.191347281
179_at 9.860457592
1861_at 7.277272799

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.




Supplementary file Size Download File type/resource
GSM203311.CEL.gz 3.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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