NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM203310 Query DataSets for GSM203310
Status Public on Jun 22, 2007
Title R495P00447
Sample type RNA
 
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 46%
Percentage of Stroma: 45%
Percentage of BPH: 2%
Percentage of Atrophic Gland: 4%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
 
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
E-mail(s) ywang@sdibr.org
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
ID_REF
VALUE RMA calculated log2 Signal intensity

Data table
ID_REF VALUE
1007_s_at 10.01306675
1053_at 6.38120661
117_at 7.073385117
121_at 9.408782408
1255_g_at 5.052249788
1294_at 8.230500948
1316_at 6.139190807
1320_at 5.500500706
1405_i_at 6.147860507
1431_at 4.68611059
1438_at 8.752493555
1487_at 8.364627637
1494_f_at 7.338262795
1598_g_at 10.08064775
160020_at 8.471808437
1729_at 8.290908186
1773_at 6.711540688
177_at 6.459960995
179_at 9.63210891
1861_at 8.5565979

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.




Supplementary file Size Download File type/resource
GSM203310.CEL.gz 3.3 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap