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Sample GSM203307 Query DataSets for GSM203307
Status Public on Jun 22, 2007
Title R492P00424
Sample type RNA
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 46%
Percentage of Stroma: 45%
Percentage of BPH: 3%
Percentage of Atrophic Gland: 4%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
VALUE RMA calculated log2 Signal intensity

Data table
1007_s_at 10.0135947
1053_at 6.257054119
117_at 6.820431263
121_at 9.542408672
1255_g_at 4.895895082
1294_at 7.864177195
1316_at 5.933785871
1320_at 5.456210528
1405_i_at 6.286139756
1431_at 4.580875948
1438_at 8.792388803
1487_at 8.623681869
1494_f_at 7.262070003
1598_g_at 10.85140861
160020_at 8.487875825
1729_at 8.714430684
1773_at 6.470190137
177_at 6.167323606
179_at 9.691991731
1861_at 7.899618384

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM203307.CEL.gz 3.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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