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Sample GSM203306 Query DataSets for GSM203306
Status Public on Jun 22, 2007
Title R491P00345
Sample type RNA
 
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 0%
Percentage of Stroma: 84%
Percentage of BPH: 13%
Percentage of Atrophic Gland: 4%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
 
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
E-mail(s) ywang@sdibr.org
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
ID_REF
VALUE RMA calculated log2 Signal intensity

Data table
ID_REF VALUE
1007_s_at 10.24744517
1053_at 6.502374423
117_at 6.770061725
121_at 9.498344044
1255_g_at 4.914855494
1294_at 8.85966867
1316_at 6.155236238
1320_at 5.434344815
1405_i_at 7.647188717
1431_at 4.443946734
1438_at 8.142063886
1487_at 8.194957796
1494_f_at 7.236928703
1598_g_at 11.75649567
160020_at 8.666507081
1729_at 8.491715976
1773_at 6.0183128
177_at 6.247664767
179_at 9.291891004
1861_at 7.149639964

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.




Supplementary file Size Download File type/resource
GSM203306.CEL.gz 3.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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