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Sample GSM203304 Query DataSets for GSM203304
Status Public on Jun 22, 2007
Title R489P00323
Sample type RNA
 
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 0%
Percentage of Stroma: 84%
Percentage of BPH: 12%
Percentage of Atrophic Gland: 4%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
 
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
E-mail(s) ywang@sdibr.org
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
ID_REF
VALUE RMA calculated log2 Signal intensity

Data table
ID_REF VALUE
1007_s_at 10.72327758
1053_at 6.485416054
117_at 7.021274721
121_at 9.699310341
1255_g_at 4.823680669
1294_at 8.458670427
1316_at 6.044657793
1320_at 5.744907409
1405_i_at 6.491858046
1431_at 4.543152692
1438_at 8.741120634
1487_at 8.133860372
1494_f_at 7.29655568
1598_g_at 11.88330006
160020_at 9.153278955
1729_at 8.173303186
1773_at 6.555196169
177_at 6.192490111
179_at 10.0116936
1861_at 6.853459962

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.




Supplementary file Size Download File type/resource
GSM203304.CEL.gz 3.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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