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Sample GSM203302 Query DataSets for GSM203302
Status Public on Jun 22, 2007
Title R487P00311
Sample type RNA
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 0%
Percentage of Stroma: 72%
Percentage of BPH: 24%
Percentage of Atrophic Gland: 3%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
VALUE RMA calculated log2 Signal intensity

Data table
1007_s_at 10.65472193
1053_at 6.32245174
117_at 6.85828709
121_at 9.467243657
1255_g_at 4.777549537
1294_at 8.859459728
1316_at 6.044672038
1320_at 5.588201888
1405_i_at 7.070484059
1431_at 4.635322726
1438_at 8.567492061
1487_at 8.029201604
1494_f_at 7.45568453
1598_g_at 11.79113057
160020_at 8.920476572
1729_at 8.329428006
1773_at 6.698816164
177_at 6.128742999
179_at 9.631705676
1861_at 7.536381854

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM203302.CEL.gz 3.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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