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Sample GSM203301 Query DataSets for GSM203301
Status Public on Jun 22, 2007
Title R485P00308
Sample type RNA
 
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 34%
Percentage of Stroma: 57%
Percentage of BPH: 0%
Percentage of Atrophic Gland: 10%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
 
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
E-mail(s) ywang@sdibr.org
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
ID_REF
VALUE RMA calculated log2 Signal intensity

Data table
ID_REF VALUE
1007_s_at 10.42470807
1053_at 6.596578689
117_at 6.943215343
121_at 9.698208383
1255_g_at 4.870000789
1294_at 8.613117939
1316_at 5.995728701
1320_at 5.69787661
1405_i_at 7.084876757
1431_at 4.690907142
1438_at 8.756201706
1487_at 8.146859125
1494_f_at 7.4300632
1598_g_at 11.07162886
160020_at 8.906054748
1729_at 8.738927345
1773_at 6.827001585
177_at 6.272303541
179_at 9.833815414
1861_at 8.14038101

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.




Supplementary file Size Download File type/resource
GSM203301.CEL.gz 3.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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