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Sample GSM203300 Query DataSets for GSM203300
Status Public on Jun 22, 2007
Title R484P00306
Sample type RNA
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 0%
Percentage of Stroma: 78%
Percentage of BPH: 14%
Percentage of Atrophic Gland: 9%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
VALUE RMA calculated log2 Signal intensity

Data table
1007_s_at 10.58471711
1053_at 6.120146341
117_at 6.820161677
121_at 9.527769523
1255_g_at 4.859951106
1294_at 8.38294698
1316_at 6.255975393
1320_at 5.48434006
1405_i_at 7.247466579
1431_at 4.590192148
1438_at 8.222840896
1487_at 8.061204878
1494_f_at 7.363535358
1598_g_at 11.33135937
160020_at 8.993325972
1729_at 8.502294703
1773_at 6.405776134
177_at 6.060181244
179_at 9.57744658
1861_at 7.489829256

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM203300.CEL.gz 3.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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