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Sample GSM203287 Query DataSets for GSM203287
Status Public on Jun 22, 2007
Title R460P00321
Sample type RNA
 
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 21%
Percentage of Stroma: 59%
Percentage of BPH: 16%
Percentage of Atrophic Gland: 1%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
 
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
E-mail(s) ywang@sdibr.org
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
ID_REF
VALUE RMA calculated log2 Signal intensity

Data table
ID_REF VALUE
1007_s_at 10.71278802
1053_at 6.40384652
117_at 6.900080109
121_at 9.839287508
1255_g_at 4.873987278
1294_at 8.415045365
1316_at 6.028591066
1320_at 5.798961334
1405_i_at 6.586822044
1431_at 4.61781801
1438_at 8.923846867
1487_at 8.126586782
1494_f_at 7.460338285
1598_g_at 11.4506769
160020_at 9.013884945
1729_at 8.047548718
1773_at 6.724097197
177_at 6.074385843
179_at 9.814772754
1861_at 7.135833262

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.




Supplementary file Size Download File type/resource
GSM203287.CEL.gz 3.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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