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Sample GSM203285 Query DataSets for GSM203285
Status Public on Jun 22, 2007
Title R458P00307
Sample type RNA
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 0%
Percentage of Stroma: 96%
Percentage of BPH: 1%
Percentage of Atrophic Gland: 1%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
VALUE RMA calculated log2 Signal intensity

Data table
1007_s_at 9.45911738
1053_at 6.335720842
117_at 6.961124198
121_at 9.543701001
1255_g_at 4.877827402
1294_at 8.619307697
1316_at 6.136051122
1320_at 5.829314462
1405_i_at 6.86332119
1431_at 4.652308278
1438_at 8.723453855
1487_at 8.071920741
1494_f_at 7.428510116
1598_g_at 12.31303879
160020_at 9.49742042
1729_at 8.292605594
1773_at 6.756368409
177_at 6.323986077
179_at 9.829697618
1861_at 7.541675835

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM203285.CEL.gz 3.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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