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Sample GSM203284 Query DataSets for GSM203284
Status Public on Jun 22, 2007
Title R457P00303
Sample type RNA
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 0%
Percentage of Stroma: 46%
Percentage of BPH: 46%
Percentage of Atrophic Gland: 3%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
VALUE RMA calculated log2 Signal intensity

Data table
1007_s_at 9.911607953
1053_at 6.51015165
117_at 6.874352423
121_at 9.641937149
1255_g_at 4.914963829
1294_at 7.825764178
1316_at 6.039663116
1320_at 5.676876944
1405_i_at 6.525966841
1431_at 4.689723234
1438_at 8.043738156
1487_at 7.862177266
1494_f_at 7.426694065
1598_g_at 10.63280964
160020_at 8.689063674
1729_at 8.338193909
1773_at 6.479592111
177_at 6.212220972
179_at 9.543927463
1861_at 7.713452172

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM203284.CEL.gz 3.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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