GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM203283 Query DataSets for GSM203283
Status Public on Jun 22, 2007
Title R456P00301
Sample type RNA
Source name normal prostate sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 0%
Percentage of Stroma: 80%
Percentage of BPH: 10%
Percentage of Atrophic Gland: 8%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
VALUE RMA calculated log2 Signal intensity

Data table
1007_s_at 10.05374334
1053_at 6.359387851
117_at 6.89280661
121_at 9.687304728
1255_g_at 4.959900319
1294_at 8.593278963
1316_at 6.253700019
1320_at 5.735187844
1405_i_at 7.409848439
1431_at 4.493532599
1438_at 8.729590613
1487_at 8.212810799
1494_f_at 7.582152414
1598_g_at 11.80875369
160020_at 9.106545816
1729_at 8.308925044
1773_at 6.523061686
177_at 6.251356609
179_at 10.05194698
1861_at 7.495969453

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM203283.CEL.gz 3.5 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap