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Sample GSM203279 Query DataSets for GSM203279
Status Public on Jun 22, 2007
Title R439P00089
Sample type RNA
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 0%
Percentage of Stroma: 94%
Percentage of BPH: 4%
Percentage of Atrophic Gland: 2%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
VALUE RMA calculated log2 Signal intensity

Data table
1007_s_at 10.48342306
1053_at 6.519753494
117_at 6.792883253
121_at 9.654525139
1255_g_at 4.870722502
1294_at 8.435763871
1316_at 5.965447625
1320_at 5.743681325
1405_i_at 6.381798096
1431_at 4.549389474
1438_at 7.797811297
1487_at 7.982945725
1494_f_at 7.301842415
1598_g_at 11.07411988
160020_at 8.691974864
1729_at 8.183976757
1773_at 6.771422327
177_at 6.384448087
179_at 9.62732266
1861_at 7.35502084

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM203279.CEL.gz 3.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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