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Sample GSM203278 Query DataSets for GSM203278
Status Public on Jun 22, 2007
Title R438P00060
Sample type RNA
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 0%
Percentage of Stroma: 98%
Percentage of BPH: 0%
Percentage of Atrophic Gland: 12%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
VALUE RMA calculated log2 Signal intensity

Data table
1007_s_at 10.79842123
1053_at 6.376906572
117_at 6.79596838
121_at 9.645573619
1255_g_at 4.854907108
1294_at 8.447628123
1316_at 6.050598239
1320_at 5.549702868
1405_i_at 6.7722279
1431_at 4.577998843
1438_at 8.44181359
1487_at 8.0609654
1494_f_at 7.276251076
1598_g_at 10.71230995
160020_at 8.787973082
1729_at 8.393891304
1773_at 6.545989666
177_at 6.270231968
179_at 9.6484593
1861_at 7.063794192

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM203278.CEL.gz 3.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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