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Sample GSM203277 Query DataSets for GSM203277
Status Public on Jun 22, 2007
Title R437P00057
Sample type RNA
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 0%
Percentage of Stroma: 55%
Percentage of BPH: 40%
Percentage of Atrophic Gland: 2%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
VALUE RMA calculated log2 Signal intensity

Data table
1007_s_at 10.24313754
1053_at 6.500287147
117_at 6.763449749
121_at 9.672498677
1255_g_at 4.95105568
1294_at 8.30544647
1316_at 5.996916715
1320_at 5.568531383
1405_i_at 6.687865432
1431_at 4.545433648
1438_at 8.20772532
1487_at 8.058056596
1494_f_at 7.28454127
1598_g_at 10.41235344
160020_at 8.686139922
1729_at 8.371006947
1773_at 6.815986233
177_at 6.321952103
179_at 9.703827953
1861_at 7.554722596

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM203277.CEL.gz 3.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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