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Sample GSM203275 Query DataSets for GSM203275
Status Public on Jun 22, 2007
Title R435P00262
Sample type RNA
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 35%
Percentage of Stroma: 45%
Percentage of BPH: 0%
Percentage of Atrophic Gland: 20%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
VALUE RMA calculated log2 Signal intensity

Data table
1007_s_at 10.31211391
1053_at 6.418373712
117_at 6.720442883
121_at 9.267553754
1255_g_at 4.737274891
1294_at 8.178833871
1316_at 5.805061753
1320_at 5.496106368
1405_i_at 5.759166844
1431_at 4.568715596
1438_at 8.107553349
1487_at 7.939530634
1494_f_at 7.051341555
1598_g_at 10.49770196
160020_at 8.560380548
1729_at 8.304761999
1773_at 6.407655157
177_at 6.183270983
179_at 9.450999053
1861_at 7.125168329

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM203275.CEL.gz 3.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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