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Sample GSM203274 Query DataSets for GSM203274
Status Public on Jun 22, 2007
Title R434P00230
Sample type RNA
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 50%
Percentage of Stroma: 50%
Percentage of BPH: 0%
Percentage of Atrophic Gland: 0%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
VALUE RMA calculated log2 Signal intensity

Data table
1007_s_at 10.02603532
1053_at 6.289657383
117_at 6.84017865
121_at 9.416562274
1255_g_at 4.797452105
1294_at 7.902738722
1316_at 5.977496592
1320_at 5.615275328
1405_i_at 6.2420474
1431_at 4.456364545
1438_at 8.352118219
1487_at 8.114679449
1494_f_at 7.252829332
1598_g_at 10.3310735
160020_at 8.606184792
1729_at 8.345377649
1773_at 6.786872135
177_at 6.178704144
179_at 9.551720325
1861_at 7.533367697

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM203274.CEL.gz 3.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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