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Sample GSM203273 Query DataSets for GSM203273
Status Public on Jun 22, 2007
Title R433P00224
Sample type RNA
 
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 80%
Percentage of Stroma: 4%
Percentage of BPH: 2%
Percentage of Atrophic Gland: 3%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
 
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
E-mail(s) ywang@sdibr.org
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
ID_REF
VALUE RMA calculated log2 Signal intensity

Data table
ID_REF VALUE
1007_s_at 10.36649469
1053_at 6.341864207
117_at 6.725915947
121_at 9.53177134
1255_g_at 4.78099235
1294_at 8.15754735
1316_at 6.082832491
1320_at 5.70518873
1405_i_at 5.575640252
1431_at 4.653683757
1438_at 8.486631697
1487_at 8.486747705
1494_f_at 7.322128751
1598_g_at 10.44288599
160020_at 8.839305497
1729_at 8.215714548
1773_at 6.660556984
177_at 6.340128248
179_at 9.73122142
1861_at 6.871282394

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.




Supplementary file Size Download File type/resource
GSM203273.CEL.gz 3.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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