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Sample GSM203272 Query DataSets for GSM203272
Status Public on Jun 22, 2007
Title R432P00185
Sample type RNA
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 0%
Percentage of Stroma: 68%
Percentage of BPH: 31%
Percentage of Atrophic Gland: 0%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
VALUE RMA calculated log2 Signal intensity

Data table
1007_s_at 10.47500562
1053_at 6.14057733
117_at 6.690192602
121_at 9.589860929
1255_g_at 4.855582958
1294_at 8.464395277
1316_at 6.03918862
1320_at 5.621199604
1405_i_at 6.376503436
1431_at 4.627092294
1438_at 8.146192856
1487_at 7.837941199
1494_f_at 7.239092084
1598_g_at 10.59163925
160020_at 8.973773449
1729_at 8.188866255
1773_at 6.729852334
177_at 6.280305804
179_at 9.735025692
1861_at 7.108625986

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM203272.CEL.gz 3.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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