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Sample GSM203271 Query DataSets for GSM203271
Status Public on Jun 22, 2007
Title R431P00183
Sample type RNA
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 0%
Percentage of Stroma: 90%
Percentage of BPH: 0%
Percentage of Atrophic Gland: 2%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
VALUE RMA calculated log2 Signal intensity

Data table
1007_s_at 9.95364934
1053_at 6.361874826
117_at 6.73657968
121_at 9.580607313
1255_g_at 4.899623566
1294_at 8.219133742
1316_at 6.035946912
1320_at 5.739490421
1405_i_at 6.791645269
1431_at 4.607677343
1438_at 8.0198443
1487_at 7.908742385
1494_f_at 7.383270612
1598_g_at 11.57910864
160020_at 8.916020914
1729_at 7.687030726
1773_at 6.520323291
177_at 6.252630016
179_at 9.52475461
1861_at 6.546620842

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM203271.CEL.gz 3.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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