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Sample GSM203270 Query DataSets for GSM203270
Status Public on Jun 22, 2007
Title R430P00182
Sample type RNA
 
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 0%
Percentage of Stroma: 67%
Percentage of BPH: 27%
Percentage of Atrophic Gland: 2%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
 
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
E-mail(s) ywang@sdibr.org
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
ID_REF
VALUE RMA calculated log2 Signal intensity

Data table
ID_REF VALUE
1007_s_at 10.53952654
1053_at 6.132943775
117_at 6.638851828
121_at 9.394751872
1255_g_at 4.822898778
1294_at 8.210545479
1316_at 5.909324074
1320_at 5.586534496
1405_i_at 5.852370145
1431_at 4.585346422
1438_at 8.061691706
1487_at 7.877554935
1494_f_at 7.077793102
1598_g_at 10.59530999
160020_at 8.936694014
1729_at 8.113069317
1773_at 6.404893294
177_at 6.25514242
179_at 9.495459259
1861_at 6.87680972

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.




Supplementary file Size Download File type/resource
GSM203270.CEL.gz 3.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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