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Sample GSM203269 Query DataSets for GSM203269
Status Public on Jun 22, 2007
Title R429P00163
Sample type RNA
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 0%
Percentage of Stroma: 100%
Percentage of BPH: 0%
Percentage of Atrophic Gland: 0%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
VALUE RMA calculated log2 Signal intensity

Data table
1007_s_at 9.907105347
1053_at 6.242595919
117_at 6.808149558
121_at 9.719215783
1255_g_at 5.003548719
1294_at 8.374270509
1316_at 6.071769291
1320_at 5.799726857
1405_i_at 6.278221814
1431_at 4.611886626
1438_at 7.961922969
1487_at 8.026604052
1494_f_at 7.413554937
1598_g_at 11.86884531
160020_at 8.909693076
1729_at 7.597781635
1773_at 6.599840911
177_at 6.246761003
179_at 9.860854668
1861_at 6.847621664

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM203269.CEL.gz 3.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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