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Sample GSM203268 Query DataSets for GSM203268
Status Public on Jun 22, 2007
Title R428P00155
Sample type RNA
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 0%
Percentage of Stroma: 82%
Percentage of BPH: 10%
Percentage of Atrophic Gland: 7%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
VALUE RMA calculated log2 Signal intensity

Data table
1007_s_at 10.29193758
1053_at 6.337970632
117_at 6.706683697
121_at 9.397161114
1255_g_at 4.769322812
1294_at 8.477200252
1316_at 6.006074261
1320_at 5.742481484
1405_i_at 7.283398905
1431_at 4.59695401
1438_at 8.100174459
1487_at 8.098632157
1494_f_at 7.10558957
1598_g_at 11.27373091
160020_at 8.857863852
1729_at 8.210734342
1773_at 6.579022541
177_at 6.273369075
179_at 9.632269078
1861_at 7.276310667

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM203268.CEL.gz 3.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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