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Sample GSM203267 Query DataSets for GSM203267
Status Public on Jun 22, 2007
Title R427P00146
Sample type RNA
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 50%
Percentage of Stroma: 40%
Percentage of BPH: 0%
Percentage of Atrophic Gland: 2%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
VALUE RMA calculated log2 Signal intensity

Data table
1007_s_at 10.86877965
1053_at 6.370749129
117_at 6.724735395
121_at 9.812612634
1255_g_at 4.966645787
1294_at 7.806289093
1316_at 6.085924714
1320_at 5.893142004
1405_i_at 6.12291323
1431_at 4.528336651
1438_at 8.728436649
1487_at 8.182193017
1494_f_at 7.423870283
1598_g_at 10.58724631
160020_at 8.702282337
1729_at 8.37404789
1773_at 6.99108296
177_at 6.202178468
179_at 9.840798013
1861_at 7.491894682

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM203267.CEL.gz 3.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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