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Sample GSM203265 Query DataSets for GSM203265
Status Public on Jun 22, 2007
Title R425P00102
Sample type RNA
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 60%
Percentage of Stroma: 30%
Percentage of BPH: 0%
Percentage of Atrophic Gland: 0%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
VALUE RMA calculated log2 Signal intensity

Data table
1007_s_at 10.88687834
1053_at 6.347393175
117_at 6.680775733
121_at 9.630447375
1255_g_at 4.841566063
1294_at 7.862628154
1316_at 6.013066536
1320_at 5.696120998
1405_i_at 6.257239271
1431_at 4.630832137
1438_at 8.755074328
1487_at 8.40683668
1494_f_at 7.342573328
1598_g_at 10.27539168
160020_at 8.728218606
1729_at 8.220630158
1773_at 6.785631956
177_at 6.229753446
179_at 9.799995976
1861_at 7.199367621

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM203265.CEL.gz 3.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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