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Sample GSM203262 Query DataSets for GSM203262
Status Public on Jun 22, 2007
Title R422P00092
Sample type RNA
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 50%
Percentage of Stroma: 40%
Percentage of BPH: 0%
Percentage of Atrophic Gland: 15%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
VALUE RMA calculated log2 Signal intensity

Data table
1007_s_at 10.54516184
1053_at 6.272433943
117_at 6.686890678
121_at 9.707885134
1255_g_at 4.844003281
1294_at 8.24082066
1316_at 5.922786106
1320_at 5.740673819
1405_i_at 6.529525132
1431_at 4.463745023
1438_at 8.442359551
1487_at 8.235136067
1494_f_at 7.238132895
1598_g_at 10.71931299
160020_at 8.796581423
1729_at 7.876962044
1773_at 6.657451383
177_at 6.253301813
179_at 9.658951326
1861_at 7.076938959

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM203262.CEL.gz 3.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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