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Sample GSM1971091 Query DataSets for GSM1971091
Status Public on Jun 01, 2016
Title G2_IB_EPOS_GNEG_2
Sample type RNA
 
Source name Endometrium cancer, FPPE section
Organism Homo sapiens
Characteristics disease state: Endometrium cancer
grade: 2
figo stage: 1B
lymphovascular space invasion status: LVSI+
lymph node status: Nodal -
sample origin: FPPE section
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using the miRNeasy FFPE Kit (Qiagen, Courtaboeuf, France), according to the manufacturer's instructions.
Label biotin
Label protocol After validation of the RNA quality with Bioanalyzer 2100, 1 µg of total RNA was biotin labelled following the FlashTag Biotin HSR RNA labelling kit (Affymetrix).
 
Hybridization protocol Following fragmentation, mirRNA targets were hybridized for 20 hr at 48C on mirRNA-40 Affymetrix. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the GCS 3000 scanner (Affymetrix)
Description G2_IB_POS_NEG
Data processing The data were preprocessed and analyzing using Partek Genomic Suite.
 
Submission date Dec 14, 2015
Last update date Jun 01, 2016
Contact name Geoffroy - CANLORBE
E-mail(s) geoffroy.canlorbe@aphp.fr
Phone +33 1 56 01 60 19
Organization name Tenon University Hospital, Assistance Publique des Hôpitaux de Paris (AP-HP), University Pierre and Marie Curie, Paris 6
Department Department of Obstetrics and Gynaecology
Lab -
Street address 4, rue de la Chine
City Paris
State/province -
ZIP/Postal code 75020
Country France
 
Platform ID GPL19117
Series (1)
GSE75968 microRNA expression profile related to lymph node status in women with stage grade 1-2-3 endometrial cancer

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
14q0_st 3.2103
14qI-1_st 1.28159
14qI-1_x_st 1.15293
14qI-2_st 0.806099
14qI-3_x_st 2.09427
14qI-4_st 4.82802
14qI-4_x_st 5.08386
14qI-5_st 0.721355
14qI-6_st 0.674498
14qI-7_st 4.1695
14qI-8_st 2.3975
14qI-8_x_st 2.52402
14qI-9_x_st 1.40272
14qII-10_st 0.486982
14qII-11_st 0.436655
14qII-12_st 4.62606
14qII-12_x_st 4.93277
14qII-13_st 1.20759
14qII-14_st 5.32962
14qII-14_x_st 4.69084

Total number of rows: 36353

Table truncated, full table size 860 Kbytes.




Supplementary file Size Download File type/resource
GSM1971091_Pool_18_J_temoin_miRNA-4_0_.CEL.gz 795.3 Kb (ftp)(http) CEL
Processed data included within Sample table

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