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Sample GSM1971089 Query DataSets for GSM1971089
Status Public on Jun 01, 2016
Sample type RNA
Source name Endometrium cancer, FPPE section
Organism Homo sapiens
Characteristics disease state: Endometrium cancer
grade: 2
figo stage: 1A
lymphovascular space invasion status: LVSI+
lymph node status: Nodal -
sample origin: FPPE section
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using the miRNeasy FFPE Kit (Qiagen, Courtaboeuf, France), according to the manufacturer's instructions.
Label biotin
Label protocol After validation of the RNA quality with Bioanalyzer 2100, 1 µg of total RNA was biotin labelled following the FlashTag Biotin HSR RNA labelling kit (Affymetrix).
Hybridization protocol Following fragmentation, mirRNA targets were hybridized for 20 hr at 48C on mirRNA-40 Affymetrix. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the GCS 3000 scanner (Affymetrix)
Description G2_IA_POS_NEG
Data processing The data were preprocessed and analyzing using Partek Genomic Suite.
Submission date Dec 14, 2015
Last update date Jun 01, 2016
Contact name Geoffroy - CANLORBE
Phone +33 1 56 01 60 19
Organization name Tenon University Hospital, Assistance Publique des Hôpitaux de Paris (AP-HP), University Pierre and Marie Curie, Paris 6
Department Department of Obstetrics and Gynaecology
Lab -
Street address 4, rue de la Chine
City Paris
State/province -
ZIP/Postal code 75020
Country France
Platform ID GPL19117
Series (1)
GSE75968 microRNA expression profile related to lymph node status in women with stage grade 1-2-3 endometrial cancer

Data table header descriptions
VALUE RMA signal

Data table
14q0_st 2.98346
14qI-1_st 1.52381
14qI-1_x_st 1.41266
14qI-2_st 0.667584
14qI-3_x_st 2.42704
14qI-4_st 5.57508
14qI-4_x_st 5.3245
14qI-5_st 0.942897
14qI-6_st 1.29399
14qI-7_st 4.52461
14qI-8_st 2.78364
14qI-8_x_st 2.73724
14qI-9_x_st 1.53185
14qII-10_st 0.449021
14qII-11_st 0.591135
14qII-12_st 5.26239
14qII-12_x_st 5.5815
14qII-13_st 0.918946
14qII-14_st 5.75586
14qII-14_x_st 4.91702

Total number of rows: 36353

Table truncated, full table size 860 Kbytes.

Supplementary file Size Download File type/resource
GSM1971089_Pool_14_H_temoin_miRNA-4_0_.CEL.gz 790.0 Kb (ftp)(http) CEL
Processed data included within Sample table

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