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Sample GSM1971086 Query DataSets for GSM1971086
Status Public on Jun 01, 2016
Sample type RNA
Source name Endometrium cancer, FPPE section
Organism Homo sapiens
Characteristics disease state: Endometrium cancer
grade: 2
figo stage: 1A
lymphovascular space invasion status: LVSI-
lymph node status: Nodal -
sample origin: FPPE section
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using the miRNeasy FFPE Kit (Qiagen, Courtaboeuf, France), according to the manufacturer's instructions.
Label biotin
Label protocol After validation of the RNA quality with Bioanalyzer 2100, 1 µg of total RNA was biotin labelled following the FlashTag Biotin HSR RNA labelling kit (Affymetrix).
Hybridization protocol Following fragmentation, mirRNA targets were hybridized for 20 hr at 48C on mirRNA-40 Affymetrix. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the GCS 3000 scanner (Affymetrix)
Description G2_IA_NEG_NEG
Data processing The data were preprocessed and analyzing using Partek Genomic Suite.
Submission date Dec 14, 2015
Last update date Jun 01, 2016
Contact name Geoffroy - CANLORBE
Phone +33 1 56 01 60 19
Organization name Tenon University Hospital, Assistance Publique des Hôpitaux de Paris (AP-HP), University Pierre and Marie Curie, Paris 6
Department Department of Obstetrics and Gynaecology
Lab -
Street address 4, rue de la Chine
City Paris
State/province -
ZIP/Postal code 75020
Country France
Platform ID GPL19117
Series (1)
GSE75968 microRNA expression profile related to lymph node status in women with stage grade 1-2-3 endometrial cancer

Data table header descriptions
VALUE RMA signal

Data table
14q0_st 2.81114
14qI-1_st 1.52633
14qI-1_x_st 1.12661
14qI-2_st 1.09797
14qI-3_x_st 2.7158
14qI-4_st 5.40175
14qI-4_x_st 5.34816
14qI-5_st 0.571946
14qI-6_st 0.879386
14qI-7_st 4.50124
14qI-8_st 2.77503
14qI-8_x_st 2.72931
14qI-9_x_st 1.85212
14qII-10_st 0.651633
14qII-11_st 0.834399
14qII-12_st 5.27526
14qII-12_x_st 5.695
14qII-13_st 0.854439
14qII-14_st 6.6028
14qII-14_x_st 5.46572

Total number of rows: 36353

Table truncated, full table size 860 Kbytes.

Supplementary file Size Download File type/resource
GSM1971086_Pool_8_E_temoin_miRNA-4_0_.CEL.gz 784.0 Kb (ftp)(http) CEL
Processed data included within Sample table

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