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Sample GSM1971083 Query DataSets for GSM1971083
Status Public on Jun 01, 2016
Sample type RNA
Source name Endometrium cancer, FPPE section
Organism Homo sapiens
Characteristics disease state: Endometrium cancer
grade: 1
figo stage: 1A
lymphovascular space invasion status: LVSI-
lymph node status: Nodal -
sample origin: FPPE section
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using the miRNeasy FFPE Kit (Qiagen, Courtaboeuf, France), according to the manufacturer's instructions.
Label biotin
Label protocol After validation of the RNA quality with Bioanalyzer 2100, 1 µg of total RNA was biotin labelled following the FlashTag Biotin HSR RNA labelling kit (Affymetrix).
Hybridization protocol Following fragmentation, mirRNA targets were hybridized for 20 hr at 48C on mirRNA-40 Affymetrix. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the GCS 3000 scanner (Affymetrix)
Description G1_IA_NEG_NEG
Data processing The data were preprocessed and analyzing using Partek Genomic Suite.
Submission date Dec 14, 2015
Last update date Jun 01, 2016
Contact name Geoffroy - CANLORBE
Phone +33 1 56 01 60 19
Organization name Tenon University Hospital, Assistance Publique des Hôpitaux de Paris (AP-HP), University Pierre and Marie Curie, Paris 6
Department Department of Obstetrics and Gynaecology
Lab -
Street address 4, rue de la Chine
City Paris
State/province -
ZIP/Postal code 75020
Country France
Platform ID GPL19117
Series (1)
GSE75968 microRNA expression profile related to lymph node status in women with stage grade 1-2-3 endometrial cancer

Data table header descriptions
VALUE RMA signal

Data table
14q0_st 3.31115
14qI-1_st 1.03171
14qI-1_x_st 0.891377
14qI-2_st 1.00115
14qI-3_x_st 1.7096
14qI-4_st 4.68914
14qI-4_x_st 4.59323
14qI-5_st 1.0732
14qI-6_st 0.872306
14qI-7_st 4.15323
14qI-8_st 2.39641
14qI-8_x_st 2.39251
14qI-9_x_st 1.15666
14qII-10_st 0.687027
14qII-11_st 0.74831
14qII-12_st 4.51185
14qII-12_x_st 5.07257
14qII-13_st 1.14033
14qII-14_st 5.17087
14qII-14_x_st 4.35495

Total number of rows: 36353

Table truncated, full table size 859 Kbytes.

Supplementary file Size Download File type/resource
GSM1971083_Pool_2_B_temoin_miRNA-4_0_.CEL.gz 822.5 Kb (ftp)(http) CEL
Processed data included within Sample table

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