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Sample GSM1971082 Query DataSets for GSM1971082
Status Public on Jun 01, 2016
Sample type RNA
Source name Endometrium cancer, FPPE section
Organism Homo sapiens
Characteristics disease state: Endometrium cancer
grade: 3
figo stage: 1B
lymphovascular space invasion status: LVSI-
lymph node status: Nodal +
sample origin: FPPE section
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using the miRNeasy FFPE Kit (Qiagen, Courtaboeuf, France), according to the manufacturer's instructions.
Label biotin
Label protocol After validation of the RNA quality with Bioanalyzer 2100, 1 µg of total RNA was biotin labelled following the FlashTag Biotin HSR RNA labelling kit (Affymetrix).
Hybridization protocol Following fragmentation, mirRNA targets were hybridized for 20 hr at 48C on mirRNA-40 Affymetrix. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the GCS 3000 scanner (Affymetrix)
Description G3_IB_NEG_POS
Data processing The data were preprocessed and analyzing using Partek Genomic Suite.
Submission date Dec 14, 2015
Last update date Jun 01, 2016
Contact name Geoffroy - CANLORBE
Phone +33 1 56 01 60 19
Organization name Tenon University Hospital, Assistance Publique des Hôpitaux de Paris (AP-HP), University Pierre and Marie Curie, Paris 6
Department Department of Obstetrics and Gynaecology
Lab -
Street address 4, rue de la Chine
City Paris
State/province -
ZIP/Postal code 75020
Country France
Platform ID GPL19117
Series (1)
GSE75968 microRNA expression profile related to lymph node status in women with stage grade 1-2-3 endometrial cancer

Data table header descriptions
VALUE RMA signal

Data table
14q0_st 3.60242
14qI-1_st 2.43982
14qI-1_x_st 1.44308
14qI-2_st 0.550483
14qI-3_x_st 1.8384
14qI-4_st 3.22361
14qI-4_x_st 3.06292
14qI-5_st 1.03324
14qI-6_st 0.904604
14qI-7_st 3.79116
14qI-8_st 2.75936
14qI-8_x_st 2.81732
14qI-9_x_st 1.14711
14qII-10_st 0.867208
14qII-11_st 0.623983
14qII-12_st 3.53493
14qII-12_x_st 4.73863
14qII-13_st 1.04219
14qII-14_st 4.43337
14qII-14_x_st 4.40362

Total number of rows: 36353

Table truncated, full table size 859 Kbytes.

Supplementary file Size Download File type/resource
GSM1971082_23_M_sain_miRNA-4_0_.CEL.gz 756.6 Kb (ftp)(http) CEL
Processed data included within Sample table

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