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Sample GSM1971080 Query DataSets for GSM1971080
Status Public on Jun 01, 2016
Sample type RNA
Source name Endometrium cancer, FPPE section
Organism Homo sapiens
Characteristics disease state: Endometrium cancer
grade: 3
figo stage: 1B
lymphovascular space invasion status: LVSI+
lymph node status: Nodal +
sample origin: FPPE section
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using the miRNeasy FFPE Kit (Qiagen, Courtaboeuf, France), according to the manufacturer's instructions.
Label biotin
Label protocol After validation of the RNA quality with Bioanalyzer 2100, 1 µg of total RNA was biotin labelled following the FlashTag Biotin HSR RNA labelling kit (Affymetrix).
Hybridization protocol Following fragmentation, mirRNA targets were hybridized for 20 hr at 48C on mirRNA-40 Affymetrix. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the GCS 3000 scanner (Affymetrix)
Description G3_IB_POS_POS
Data processing The data were preprocessed and analyzing using Partek Genomic Suite.
Submission date Dec 14, 2015
Last update date Jun 01, 2016
Contact name Geoffroy - CANLORBE
Phone +33 1 56 01 60 19
Organization name Tenon University Hospital, Assistance Publique des Hôpitaux de Paris (AP-HP), University Pierre and Marie Curie, Paris 6
Department Department of Obstetrics and Gynaecology
Lab -
Street address 4, rue de la Chine
City Paris
State/province -
ZIP/Postal code 75020
Country France
Platform ID GPL19117
Series (1)
GSE75968 microRNA expression profile related to lymph node status in women with stage grade 1-2-3 endometrial cancer

Data table header descriptions
VALUE RMA signal

Data table
14q0_st 2.89175
14qI-1_st 2.23998
14qI-1_x_st 2.11396
14qI-2_st 0.738511
14qI-3_x_st 2.02915
14qI-4_st 4.53756
14qI-4_x_st 4.08948
14qI-5_st 1.12359
14qI-6_st 0.406082
14qI-7_st 4.16603
14qI-8_st 2.69253
14qI-8_x_st 2.67489
14qI-9_x_st 1.4653
14qII-10_st 0.805732
14qII-11_st 0.453595
14qII-12_st 4.719
14qII-12_x_st 5.19673
14qII-13_st 0.970602
14qII-14_st 4.63849
14qII-14_x_st 3.99552

Total number of rows: 36353

Table truncated, full table size 860 Kbytes.

Supplementary file Size Download File type/resource
GSM1971080_19_K_sain_miRNA-4_0_.CEL.gz 810.8 Kb (ftp)(http) CEL
Processed data included within Sample table

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