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Sample GSM1971079 Query DataSets for GSM1971079
Status Public on Jun 01, 2016
Title G2_IB_EPOS_GPOS_2
Sample type RNA
 
Source name Endometrium cancer, FPPE section
Organism Homo sapiens
Characteristics disease state: Endometrium cancer
grade: 2
figo stage: 1B
lymphovascular space invasion status: LVSI+
lymph node status: Nodal +
sample origin: FPPE section
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using the miRNeasy FFPE Kit (Qiagen, Courtaboeuf, France), according to the manufacturer's instructions.
Label biotin
Label protocol After validation of the RNA quality with Bioanalyzer 2100, 1 µg of total RNA was biotin labelled following the FlashTag Biotin HSR RNA labelling kit (Affymetrix).
 
Hybridization protocol Following fragmentation, mirRNA targets were hybridized for 20 hr at 48C on mirRNA-40 Affymetrix. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the GCS 3000 scanner (Affymetrix)
Description G2_IB_POS_POS
Data processing The data were preprocessed and analyzing using Partek Genomic Suite.
 
Submission date Dec 14, 2015
Last update date Jun 01, 2016
Contact name Geoffroy - CANLORBE
E-mail(s) geoffroy.canlorbe@aphp.fr
Phone +33 1 56 01 60 19
Organization name Tenon University Hospital, Assistance Publique des Hôpitaux de Paris (AP-HP), University Pierre and Marie Curie, Paris 6
Department Department of Obstetrics and Gynaecology
Lab -
Street address 4, rue de la Chine
City Paris
State/province -
ZIP/Postal code 75020
Country France
 
Platform ID GPL19117
Series (1)
GSE75968 microRNA expression profile related to lymph node status in women with stage grade 1-2-3 endometrial cancer

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
14q0_st 3.03912
14qI-1_st 1.61972
14qI-1_x_st 1.06391
14qI-2_st 0.522767
14qI-3_x_st 2.40234
14qI-4_st 5.15806
14qI-4_x_st 4.98647
14qI-5_st 1.13532
14qI-6_st 0.902362
14qI-7_st 3.99036
14qI-8_st 2.81928
14qI-8_x_st 2.81928
14qI-9_x_st 1.84749
14qII-10_st 0.69823
14qII-11_st 0.780699
14qII-12_st 5.35347
14qII-12_x_st 5.68168
14qII-13_st 0.968752
14qII-14_st 5.73552
14qII-14_x_st 4.87841

Total number of rows: 36353

Table truncated, full table size 860 Kbytes.




Supplementary file Size Download File type/resource
GSM1971079_17_J_sain_miRNA-4_0_.CEL.gz 767.8 Kb (ftp)(http) CEL
Processed data included within Sample table

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